PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY55427.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 310aa    MW: 35680.2 Da    PI: 8.2238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY55427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.6e-0792108622
                 -SGGGGTS--TTTTT-S CS
     zf-CCCH   6 CrffartGtCkyGdrCk 22 
                 C+f+++tG C++G rC+
  GAY55427.1  92 CPFHLKTGACRFGQRCS 108
                 ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEDNECRDGG KKILTRILPS GGGDAENLQR ILRLLTSYGV FSEHREFGGE KRMNDVDRPT  60
SNPLPPQSEA FADHQNAQQE LETVAQQDKV HCPFHLKTGA CRFGQRCSRV YFYPDKSCTL  120
LIKNMHNGPG LAWEQDEGLE VCRNGFSHLR GNIYVHYKSL ESAVLAYHSI NGRYFAGKQT  180
CSRGMARNFI HCFRNPGGDY EWADLDKPPP RYWVKKMAAL FGYSDESGTW NQERSGQTRN  240
KIDSTNADRH HYRRSRLREA DRVKSGSGRS HDDERQVHET TWSRRRSNYH SESRSDEANS  300
DGSWSDRDRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.12e-92C3H family protein