PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55589.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 459aa MW: 49948.1 Da PI: 8.587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	34	54	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H GAY55589.1 34 CEICGKGFQRDQNLQLHRRGH 54 *******************88 PP
2	zf-C2H2	13.5	0.00021	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GAY55589.1 108 WKCEKCSKRYAVQSDWKAHSKTC 130 58*****************9998 PP
3	zf-C2H2	11.5	0.00092	138	156	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + GAY55589.1 138 DCGTVFSRRDSFITHRAFC 156 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MLDKMPEDTI PNDPEAEVIA LSPKTLMATN RFLCEICGKG FQRDQNLQLH RRGHNLPWKL 60 KQRTSKEVRK RVYVCPEKTC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ 120 SDWKAHSKTC GTREYKCDCG TVFSRRDSFI THRAFCDALA EETARVNAAS SMNSLANGSI 180 SYHFMGTPLG PSVAQHFSSI FKPIPGGGAD ETIDQTRRGL SLWMAPGSQG HETVGSNLTE 240 IQQLGSVSSE AMYGDHPPPS DYHFNWVFGN NKQSSNNAAE APAIASASLP LTGVKEAAAT 300 ASHHHQLVSV NVPSLYSSQQ QQTTTHQTQA AAAAANMSAT ALLQKAAQIG SASTDPSLFL 360 GSLGFKCSSN INQVQDGNKY CGLMYCSNAI ADRHLGNDVE ISSASDISSL SQLQMPPPAK 420 RRHLQSDRQA ESAGGQTRDF LGVGVQAISC HPSSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MLDKMPEDTI PNDPEAEVIA LSPKTLMATN RFLCEICGKG FQRDQNLQLH RRGHNLPWKL  60
KQRTSKEVRK RVYVCPEKTC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ  120
SDWKAHSKTC GTREYKCDCG TVFSRRDSFI THRAFCDALA EETARVNAAS SMNSLANGSI  180
SYHFMGTPLG PSVAQHFSSI FKPIPGGGAD ETIDQTRRGL SLWMAPGSQG HETVGSNLTE  240
IQQLGSVSSE AMYGDHPPPS DYHFNWVFGN NKQSSNNAAE APAIASASLP LTGVKEAAAT  300
ASHHHQLVSV NVPSLYSSQQ QQTTTHQTQA AAAAANMSAT ALLQKAAQIG SASTDPSLFL  360
GSLGFKCSSN INQVQDGNKY CGLMYCSNAI ADRHLGNDVE ISSASDISSL SQLQMPPPAK  420
RRHLQSDRQA ESAGGQTRDF LGVGVQAISC HPSSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-139	C2H2 family protein