PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY55622.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 167aa    MW: 19106.4 Da    PI: 9.7405
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY55622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.11.9e-3518116198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++r+kC++dC la+yfpa+++k+f++vhk+FG+snv+k+++++++ee r+++++sl++eA +r++dPv+G +g ++++ ++l+  ++++ +++
  GAY55622.1  18 ACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTKIVQNANDEEsRQKVVDSLIWEAFWRQKDPVSGPYGEYQRICEELKLYRSQTLMQN 116
                 7************************************************77776**********************************99998876655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MMQRNNNNSS TTSSVQSACA ACKHQRKKCS EDCKLARYFP ANRSKEFQAV HKVFGVSNVT  60
KIVQNANDEE SRQKVVDSLI WEAFWRQKDP VSGPYGEYQR ICEELKLYRS QTLMQNHNHR  120
NQNHQLVQLP GQGGMIYRSS SQPLMGWNNG MNTNNGISVN LVEQVAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-44LBD family protein