PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY55684.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 270aa    MW: 29837.3 Da    PI: 9.6878
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY55684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033100120323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C+ C+k Fs++  L  H++ H
  GAY55684.1 100 CNFCNKIFSTSQALGGHQNAH 120
                 ******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MGTLSSPKPC LSESSSISAT SQQQEAPNKQ VAEVTEPIQT KSKFNILFNQ NIAIDNVSVT  60
ESEVELRLFS MGGTSNPQAN ESSSHESIRK KQPKQKGFLC NFCNKIFSTS QALGGHQNAH  120
KQERALAKRR KEMDMGALGH HHYPYYPYSS SVAHQNPNFY GSLFNRSSPL GVSMQPMIRK  180
PSYPWVPLWD RFGGHGKTVM NAQLAYDKMR LESVMEAQNG GVRAEFRNLN GSGMAAKRPN  240
NDGGDRLKGN SSSQSNQHDD DSGLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-16C2H2 family protein