PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56099.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 234aa MW: 26035.7 Da PI: 6.976

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	81.8	1.7e-25	75	130	6	61
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass 61 +C+dCGn+ak++C+++RCRtCCk+r fdC+thv+stWvpaakrr++++ + ss GAY56099.1 75 RACRDCGNRAKRECSFRRCRTCCKTRRFDCTTHVRSTWVPAAKRRQKKKLITGGSS 130 58********************************************9887766554 PP
2	DUF702	70.3	6.3e-22	125	202	80	154
DUF702 80 skkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgee...elaYqtavsigGhvfkGiLydqGlee 154 ++ s++s + ++a+ + e+ ++slP +v+++avfrc++v++v+dg++ e++Y ++v+i+GhvfkG+Lyd G++e GAY56099.1 125 ITGGSSSSLSFSTTASCQDESFKKSLPGKVQAPAVFRCIKVTAVSDGDDnkaEVGYVATVNISGHVFKGFLYDLGIDE 202 3333333333333444455566677*****************88654222799******************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MLNLHDIIFA APPPQPPRIS SDLHHQDDDD DDNDRNTSNL HKIGFWGLKK WQEESHTDVE 60 DDSDDHDGDH SGLMRACRDC GNRAKRECSF RRCRTCCKTR RFDCTTHVRS TWVPAAKRRQ 120 KKKLITGGSS SSLSFSTTAS CQDESFKKSL PGKVQAPAVF RCIKVTAVSD GDDNKAEVGY 180 VATVNISGHV FKGFLYDLGI DEKKLFPWDS SGRENKESSP PNVDSSNADA TSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-31	SRS family protein