PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56260.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 379aa MW: 41964.3 Da PI: 6.8976

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.3e-40	88	164	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+vl+ g++qrfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+ GAY56260.1 88 CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 164 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDWNLKPAWD FTEFEQEAIP NVDAVDESSS RTKGNFSVDL KLGQVNSSAE DSLNKCKEPG 60 ASKMESPSPS GSFKRARAAN NGSQTASCLV DGCDSDLSNC RDYHRRHKVC ELHSKTPQVL 120 ICGQKQRFCQ QCSRFHCLEE FDEGKRSCRK RLDGHNRRRR KPQPDQLSRT GTFLSNYQGA 180 SLLPFSSSHM YPSATVVKPT WTGVVNTEAD ARCYNEHHRL NLPDERNLFF RSPSSSYKTG 240 KQFTFLQGDN PTFNSQTSSE ASVSQPLLGT ANLSDRSGAS HNVFHDRSTT QDSDCALSLL 300 SSPTTQTSGI SLSQMMPPSS MPLVRSLGTS LHNHSVEPME SVLVSSDQDD NVHCPGVFHL 360 GYDGSAASDT PQTIPFHWE

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDWNLKPAWD FTEFEQEAIP NVDAVDESSS RTKGNFSVDL KLGQVNSSAE DSLNKCKEPG  60
ASKMESPSPS GSFKRARAAN NGSQTASCLV DGCDSDLSNC RDYHRRHKVC ELHSKTPQVL  120
ICGQKQRFCQ QCSRFHCLEE FDEGKRSCRK RLDGHNRRRR KPQPDQLSRT GTFLSNYQGA  180
SLLPFSSSHM YPSATVVKPT WTGVVNTEAD ARCYNEHHRL NLPDERNLFF RSPSSSYKTG  240
KQFTFLQGDN PTFNSQTSSE ASVSQPLLGT ANLSDRSGAS HNVFHDRSTT QDSDCALSLL  300
SSPTTQTSGI SLSQMMPPSS MPLVRSLGTS LHNHSVEPME SVLVSSDQDD NVHCPGVFHL  360
GYDGSAASDT PQTIPFHWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	162	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-70	SBP family protein