PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56539.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARR-B

Protein Properties

Length: 601aa MW: 65470.9 Da PI: 6.2828

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81	1.4e-25	220	270	1	52
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ GAY56539.1 220 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQE 270 79*****************.*************************974 PP
2	Myb_DNA-binding	36.1	1.5e-11	222	269	1	45
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++q GAY56539.1 222 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQ 269 678********************************************9 PP
3	Response_reg	79.3	1.3e-26	36	144	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++l+q+l++ y +v++++++ al++l+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a g + + + ++ Ga GAY56539.1 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALNILRERKgcFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGAC 130 89*******************.***************************************6654.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + GAY56539.1 131 DYLIKPIREEELKN 144 *********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV 60 TTCSQAAVAL NILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADGRVSA 120 VMRGIRHGAC DYLIKPIREE ELKNIWQHVV RKRWNENKEH ENSGSLEETD HHKRGSDEIE 180 YASSVNEGTE GTFKAQRKRI SAKEEDDGEL ESDDPSTTKK PRVVWSVELH QQFVSAVNQL 240 GIDKAVPKRI LELMNVPGLT RENVASHLQE INLQKFRLYL KRLNGVSQQG GITNSFCAPI 300 ETNVKLGSLG RFDIQALAAS GQIPPQTLAA LHAELLGRPT GNLVTAVDQP ALLQATLQGP 360 KCIPADHGVA FGQQLVKCQS NVPENLPQSI ISVDDASTAS FQAGNSPASV NQSCSFNRGA 420 VVDYSLLSSQ SNNSSLNMGQ ISDGDIKTTG VITGYLAPGS LSPSASSCSV TADNTSSQQV 480 QNSNIAFRAA RQVPGLVSNV GDIQGSYGAK SGEVFDLGSL RNHGFMGKGN CIPSRLAVDE 540 FESPMNNLNY GNIYLDNNAN KVKEEPNLEF VDNAKVGIPM YQQFVFSREH KYHPIFMKIK 600 S

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV  60
TTCSQAAVAL NILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADGRVSA  120
VMRGIRHGAC DYLIKPIREE ELKNIWQHVV RKRWNENKEH ENSGSLEETD HHKRGSDEIE  180
YASSVNEGTE GTFKAQRKRI SAKEEDDGEL ESDDPSTTKK PRVVWSVELH QQFVSAVNQL  240
GIDKAVPKRI LELMNVPGLT RENVASHLQE INLQKFRLYL KRLNGVSQQG GITNSFCAPI  300
ETNVKLGSLG RFDIQALAAS GQIPPQTLAA LHAELLGRPT GNLVTAVDQP ALLQATLQGP  360
KCIPADHGVA FGQQLVKCQS NVPENLPQSI ISVDDASTAS FQAGNSPASV NQSCSFNRGA  420
VVDYSLLSSQ SNNSSLNMGQ ISDGDIKTTG VITGYLAPGS LSPSASSCSV TADNTSSQQV  480
QNSNIAFRAA RQVPGLVSNV GDIQGSYGAK SGEVFDLGSL RNHGFMGKGN CIPSRLAVDE  540
FESPMNNLNY GNIYLDNNAN KVKEEPNLEF VDNAKVGIPM YQQFVFSREH KYHPIFMKIK  600
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	1e-124	ARR-B family protein