PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57121.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 618aa MW: 69691.8 Da PI: 8.9204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	286	376	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fY +YAk++GFsvrk+ ++++ +g++t r++vCskegkr+++ + +++++ ++ tr C+a + ++ ++ +g+w+ + + H+H l+p GAY57121.1 286 FYFDYAKSIGFSVRKNIMRTN-VQGQVTVRRWVCSKEGKRSKKYLElPDRKKTAKPLTRELCRAAFCIRFDHrKGVWVACEWVDTHTHVLVP 376 9*************99988.8888************9988678888899***********999*************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
FARELAKSKF GDKEGVNLPC SAASHAAHAW YRYNRFSTGR SFMFTFVSQF SVESPQNSMT 60 LFQISVGVFF PPLIVKFLVK VSSLLLESQL LVEITQILVQ LFRILGDVFE ISSLLLVSQL 120 TVQMTQILIE LFPILGEVEV SSLLLHPNFQ LKILKFHDIV PNFGWVVKFD ISIFIAEFWD 180 YGYNRQSCLM YLKTLPFDMD PTSLFLYTIM DASLDGAISD DSLSLAACTF NSTSSNQFES 240 LLPNLEANTQ PPNSDHTFSS YASGDRLSEY DVIGRVFSSI EEAETFYFDY AKSIGFSVRK 300 NIMRTNVQGQ VTVRRWVCSK EGKRSKKYLE LPDRKKTAKP LTRELCRAAF CIRFDHRKGV 360 WVACEWVDTH THVLVPAVQT CGLCGNEQVD HIVINSIKLH NKLPRSDSWE IMSLGIPCSH 420 SFTVMKAENI SEIPKCMILS RWTKNSKIAQ SYLQHFSSKP SMNEAARIGS LTIACRNLIH 480 FAAKMVDGYN NAIQVIHGLT LRAQDVLDID DIPRASTKGR LVDIIKDPLI IKTKGSAKTT 540 KAFVKKRLCG TCQQPGHTKR TCIQYGGVKG VMDKALTVLP FPHRTYHKTI EVAPYHPSGM 600 SGGIIMLVKF NTTWDTMQ

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

FARELAKSKF GDKEGVNLPC SAASHAAHAW YRYNRFSTGR SFMFTFVSQF SVESPQNSMT  60
LFQISVGVFF PPLIVKFLVK VSSLLLESQL LVEITQILVQ LFRILGDVFE ISSLLLVSQL  120
TVQMTQILIE LFPILGEVEV SSLLLHPNFQ LKILKFHDIV PNFGWVVKFD ISIFIAEFWD  180
YGYNRQSCLM YLKTLPFDMD PTSLFLYTIM DASLDGAISD DSLSLAACTF NSTSSNQFES  240
LLPNLEANTQ PPNSDHTFSS YASGDRLSEY DVIGRVFSSI EEAETFYFDY AKSIGFSVRK  300
NIMRTNVQGQ VTVRRWVCSK EGKRSKKYLE LPDRKKTAKP LTRELCRAAF CIRFDHRKGV  360
WVACEWVDTH THVLVPAVQT CGLCGNEQVD HIVINSIKLH NKLPRSDSWE IMSLGIPCSH  420
SFTVMKAENI SEIPKCMILS RWTKNSKIAQ SYLQHFSSKP SMNEAARIGS LTIACRNLIH  480
FAAKMVDGYN NAIQVIHGLT LRAQDVLDID DIPRASTKGR LVDIIKDPLI IKTKGSAKTT  540
KAFVKKRLCG TCQQPGHTKR TCIQYGGVKG VMDKALTVLP FPHRTYHKTI EVAPYHPSGM  600
SGGIIMLVKF NTTWDTMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-12	FAR1 family protein