PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY57130.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 714aa    MW: 78330 Da    PI: 6.4074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY57130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-192984156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t+ q+++Le++F+ +++p++++r +L+++lgL  rq+k+WFqNrR+++k
  GAY57130.1 29 KKRYHRHTALQIQRLEAMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 84
                678899***********************************************998 PP
2START174.66e-552274482206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 +a  a++el+++ + +ep+W+kss    ++++ d + + f+++++       ++e +r+sgvv+m+   lv  ++d + +W e ++     a+t+evis
  GAY57130.1 227 IAANAMEELLRLLQTNEPLWMKSStdgrDILDLDSYERMFPRANShlknpnVRIESSRDSGVVIMNGLALVDMFMDCS-KWVELFPtivsMAKTIEVIS 324
                 67889***********************************999999****99**************************.******999999******** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 sg      g l lm+ elq+lsp+vp R+f+++Ry++q ++g+w++v vS ds+q+ ++      ++++pSg+li++++ng+skvtwveh + ++r+p 
  GAY57130.1 325 SGmmgghsGSLLLMYEELQVLSPVVPtREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQ----CQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPi 419
                 ********************************************************886....88999******************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h l++ l++sg+a+ga +w+atlqr ce+
  GAY57130.1 420 HRLYQDLIQSGMAFGADRWLATLQRMCER 448
                 ***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MEFGSGGGGG GGGSGSGGDH DGSDPQKRKK RYHRHTALQI QRLEAMFKDC PHPDEKQRLQ  60
LSRELGLAPR QIKFWFQNRR TQMKAQHERA DNCGLRAEND KIRCENIAIR EALKNVICPS  120
CGGPPVTEDS YFDEQKLRME NAQLKEELDR VSSIAAKYIG RPISQLPPVQ PIHISSLDLT  180
MGTFGGQGIS GPSLDLDLLP GSSSTLPNLP YQQIVLSDMD KSLMTDIAAN AMEELLRLLQ  240
TNEPLWMKSS TDGRDILDLD SYERMFPRAN SHLKNPNVRI ESSRDSGVVI MNGLALVDMF  300
MDCSKWVELF PTIVSMAKTI EVISSGMMGG HSGSLLLMYE ELQVLSPVVP TREFYVLRYC  360
QQIEQGSWAV VNVSYDSPQF SSQCQSHRFP SGCLIQDLPN GYSKVTWVEH LEIEDRTPIH  420
RLYQDLIQSG MAFGADRWLA TLQRMCERFA CLMVSGTSTR DLGGVIPSPD GKRSMMKLAQ  480
RMVSSFCTSI STSNRHRGTT ISGLNEVGVR VTLHKSMDPG QPNGVVLNAA TTFWLPIPPQ  540
NVFNFFKDER TRPQWDVLTN GNAVQEVAHI ANGSNPGNCI SVLRAINTSQ NNMLILQESC  600
IDSSGSLVVY CPVDLPAINI AMSGEDPSYI PLLPSGFTIS PDGHLDQGDG ASTSSNVHGN  660
MGSRSSGSLI SVAFQILVSS LPSAKLNMES VTTVNNLIGT TVQQIKAALN CPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein