PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY57494.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 821aa    MW: 90759.9 Da    PI: 5.6172
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY57494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-2090145156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  GAY57494.1  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 145
                 688899***********************************************998 PP
2START157.88.8e-502875122206
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                 la + ++elvk+  a+ep W +s   eng+evl  +e ++              +++ea r+++vv+m++ +lv  +ld + +W e ++    +a+t++
  GAY57494.1 287 LAASSMNELVKMCHAAEPIWIRSN--ENGKEVLNLEEHARMfpwplnlkqhsseFRTEATRDTAVVIMNSITLVDAFLDAN-KWMELFPsivaRAKTVQ 382
                 78899*******************..**********99888****************************************.******99999****** PP

                 EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                 vi sg     g l+lm+aelq+lsplvp R+ +f+Ry++q  ++g+w++vd   ds  +++ ++s+   +++pSg++i++++ng+s+vtwveh++ +++
  GAY57494.1 383 VIASGvssasGSLHLMYAELQVLSPLVPtREAYFLRYCQQnVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEK 481
                 ****************************************99******************9999888888***************************** PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                  +h+++ + v s +a+ga++w++ lqrqce+
  GAY57494.1 482 PVHQIFSHYVYSAMAFGASRWLSVLQRQCER 512
                 *****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    
MYGDCQVMPN MGGNIVSTET LFSSPPVQNP NFNFMPFHSF PSIAPKEENG LLMFRGKEDV  60
ESGSGSEQVE EKSGNELESS DQLQQPNNKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRM  120
RLSQELGLKP RQVKFWFQNR RTQMKAQQDR ADNAVLRAEN ESLKSENYRL QAELRSVICP  180
NCGGPAMLGG ISFEDIRIEN ARLREELERV CCLTSRYSGR PVQAMAPAPA LIPPSLDLDM  240
NIYSRHFAEP MPNGGGMMPM PMFLEASPYH ETGLILMEEE KSLAMELAAS SMNELVKMCH  300
AAEPIWIRSN ENGKEVLNLE EHARMFPWPL NLKQHSSEFR TEATRDTAVV IMNSITLVDA  360
FLDANKWMEL FPSIVARAKT VQVIASGVSS ASGSLHLMYA ELQVLSPLVP TREAYFLRYC  420
QQNVEEGTWA VVDFPMDSFH DNNIQPSFPL YRRRPSGCII QDMPNGYSRV TWVEHAEIEE  480
KPVHQIFSHY VYSAMAFGAS RWLSVLQRQC ERVASLMARN IPDLGVIPSP EARKNLMRLS  540
QRMIRTFSVN ISTASGQSWT ALSDSCADTV RITTRKITEP GQPNGLILCA VSTTWLPYPH  600
YQVFDLLRDE RRRSQQLDVL SNGNALHEVA HIANGSHPGN CISLLRINVA SNSSQHVELM  660
LQECCTDQSG SLVVYTTVDV DSIQLAMSGE DPSCIPLLPL GFVIVPVEPI KESNTTSGDG  720
NSMGLSPEEA NNIGVQNNSA GCLLTVGLQV LGSTIPSAKL NLSSVNAINS HLCSTVQQIT  780
AALSNGTGTG TGTGTGCPDN NNNGTVLGSL QEPDGGGAPK Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein