PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57528.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 375aa MW: 41411.7 Da PI: 6.2705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++++ G g+W+t +++ g+ R++k+c++rw +yl GAY57528.1 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81 89****************************99**********97 PP
2	Myb_DNA-binding	46.4	8.8e-15	92	132	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GAY57528.1 92 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MRNPSTSPSS TAAAAAAAAT NKSTPCCSKV GLKRGPWTPE EDELLANYIN KEGEGRWRTL 60 PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT 120 DNEIKNYWNT HLSKKLISQG IDPRTHKPLN QELDPSSADQ VTNSNSKAST SKAILNSSSS 180 NPNLTPMTVS SGHLDQRHTS AGCGRMISSI MMINKENGYS PNALVDDHDS EYHQNGMMEN 240 PYTSLSNCDH HHDDDGGLGL RSNNVNNVFN EGLSYEVDVD INYCNDDVFS SFLNSLINED 300 AFASQHNQQV LQQQQQQHLS NETIALPNTI TGSSSDPLVS TAAASTFGLE ANWESPIMAS 360 SLNQDESRRV DEHVE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MRNPSTSPSS TAAAAAAAAT NKSTPCCSKV GLKRGPWTPE EDELLANYIN KEGEGRWRTL  60
PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNYWNT HLSKKLISQG IDPRTHKPLN QELDPSSADQ VTNSNSKAST SKAILNSSSS  180
NPNLTPMTVS SGHLDQRHTS AGCGRMISSI MMINKENGYS PNALVDDHDS EYHQNGMMEN  240
PYTSLSNCDH HHDDDGGLGL RSNNVNNVFN EGLSYEVDVD INYCNDDVFS SFLNSLINED  300
AFASQHNQQV LQQQQQQHLS NETIALPNTI TGSSSDPLVS TAAASTFGLE ANWESPIMAS  360
SLNQDESRRV DEHVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-83	MYB family protein