PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57755.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25809.2 Da PI: 9.8487

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.5	2e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++ey+s GAY57755.1 9 KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59 79***********************************************86 PP
2	K-box	87.2	3.2e-29	71	164	1	94
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yqks g++l++++++++q+ ++kLk+ +++L++ +R+++GedL++L+++eL+ Leq++ +s ++R++K +++++q+++ +kk ++l+e++ ++ GAY57755.1 71 YQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNI 164 899999***********************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MGRGKIEIKR IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TGKFHEYISP 60 TTTTKKMFDQ YQKSLGVDLW STHYAKMQES YRKLKEINNK LRKDIRQRMG EDLDDLTFEE 120 LRGLEQNMSS SAATVRERKF HVIKTQTDTY KKKVRNLEER HGNILLDFET KYDDPHYGLV 180 DNGDYQSAMA LANGASNLYA FRMQQQNLHQ GTGGYGSSDL TLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-79	MIKC_MADS family protein