PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57830.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 685aa MW: 74655.7 Da PI: 5.349

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	505	550	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L GAY57830.1 505 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 550 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MTDYRLPSTM NLWTDDNGSV MEAFMSSDLT GIWPPSQSSA STADPMKTHI SSSSQQQQQQ 60 QQFFNQETLQ QRLQQLIEGS REGWTYAIFW QSSCDYSGSS MLGWGDGYYK GEGEKGKSSK 120 IKTSSAAEQE HRKKVLRELN SLISGSTSSP TDDAVDEEVT DTEWFFLISM TQSFYVTGGG 180 GGGGLPGQAY FGNSPVWVSG AERLANSGCD RARQGQVFGL QTLVCIPSAN GVVELGSTEV 240 IIQNSDLMNK VRFLFNFNGS MEIGTWPSAM QNPDQGENDP SSWINDPSPT PAPTAGFIEI 300 KDSTAAAATT TTTTTTTTTP VIGSGSASNL SKGIHFELPS SVSLTESVDL QHQQIPQTQS 360 FFTRELNFSE YAYDHNSVKN GSSRLFKPES GEILNFAESK RSSCTGNGNN SLLSNHSQFV 420 AEESNKKKRS PTSRGSTEEG MLSFTSGVIL PSSGVVKSSG GAGDSDHSDL EASVVKDPDS 480 SRVEPEKKPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL 540 GDAISYINEL RTKLQSAESD KEDLQKELAS VKKELAGGGK DSHSGPSTSD QDLKMSNHAS 600 KLIDLDIEVK IIGWDAMIRI QSSKKNHPAA KLMEALKELD LEVNHASMSV VNDLMIQQAT 660 VKMGSRFYTQ EQLKNVLAAK VGDTQ

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MTDYRLPSTM NLWTDDNGSV MEAFMSSDLT GIWPPSQSSA STADPMKTHI SSSSQQQQQQ  60
QQFFNQETLQ QRLQQLIEGS REGWTYAIFW QSSCDYSGSS MLGWGDGYYK GEGEKGKSSK  120
IKTSSAAEQE HRKKVLRELN SLISGSTSSP TDDAVDEEVT DTEWFFLISM TQSFYVTGGG  180
GGGGLPGQAY FGNSPVWVSG AERLANSGCD RARQGQVFGL QTLVCIPSAN GVVELGSTEV  240
IIQNSDLMNK VRFLFNFNGS MEIGTWPSAM QNPDQGENDP SSWINDPSPT PAPTAGFIEI  300
KDSTAAAATT TTTTTTTTTP VIGSGSASNL SKGIHFELPS SVSLTESVDL QHQQIPQTQS  360
FFTRELNFSE YAYDHNSVKN GSSRLFKPES GEILNFAESK RSSCTGNGNN SLLSNHSQFV  420
AEESNKKKRS PTSRGSTEEG MLSFTSGVIL PSSGVVKSSG GAGDSDHSDL EASVVKDPDS  480
SRVEPEKKPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL  540
GDAISYINEL RTKLQSAESD KEDLQKELAS VKKELAGGGK DSHSGPSTSD QDLKMSNHAS  600
KLIDLDIEVK IIGWDAMIRI QSSKKNHPAA KLMEALKELD LEVNHASMSV VNDLMIQQAT  660
VKMGSRFYTQ EQLKNVLAAK VGDTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	487	495	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein