PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY58078.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 302aa    MW: 33066.8 Da    PI: 7.2386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY58078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-10657345
                     SS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwq 45
                      W+ eEd+ + +a++++  +          +W +Ia++++  R+ +++k ++q
       GAY58078.1  6 TWSREEDKAFENAIAMHCIEeddskeeqqqQWQKIASMVP-SRSVEELKQHYQ 57
                     5****************999********************.***********9 PP
2Myb_DNA-binding38.92e-12135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
       GAY58078.1 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MSSAATWSRE EDKAFENAIA MHCIEEDDSK EEQQQQWQKI ASMVPSRSVE ELKQHYQILL  60
EDVNAIEAGN IPLPNYVGED RATSSTKDFH GPSTAADNRS NGVYGSGFSG LSHDPSGHGS  120
KGSSKSEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VNNGDVSAHH QAPITGQQQA NTNPPGAATL PMEASVKHRS  240
QPHMPGLGMY GAPVGHPIAA LGHMASAVGT PVMLPPGHHP HPHPPYAVPV AYPMAPPPTM  300
HH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.17e-74MYB family protein