PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58469.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 954aa MW: 105842 Da PI: 8.832

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.8e-06	255	275	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++fa+ G C++G+ C+F+H GAY58469.1 255 LCKDFAA-GKCRRGSHCHFSHH 275 9****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence
FSFVFAPCLV SLLLDTICKN LHQLQSQILL TASVYLSKTQ YFNKVNAWRD CQIVLVLVVN 60 LSLCFYDMSG TRRKHNSKWD LKEESQLSHE KVRDSARPGK AGISFYERES RSGRFSPRAA 120 GYNSGHNWSA READDIQSSR HDMQFSSREP LPGSRSSRKD DRIDDYRENF KATATWDADG 180 NYDMKMSPGL DDWRQQIRRR SPRKDWNGHR RSRSRSRSRS RSRSWNRSRS PVRELRRESG 240 VYGRNRGRPG VSAQLCKDFA AGKCRRGSHC HFSHHSSQSY EDNWDSRHKQ AGAPRFSTPH 300 ESREYPIRSG RNREGSLEIV DIPCKFFAAG NCRNGKYCKF FHSSQALASP VRRSRDDSLV 360 RGQNSDEREK LWHGSKWTDA TTISDAARLS EDKNERMGAK KSRDDGLVRN HNSDDVEKLW 420 NGSTWNGTDI STDAAKLSEN QNVGMGAPGP RFSGWSTDDR LPHTLDENAT HSKITAVTLG 480 GDEINKMEAS QGSIKIAGAV MGAPESGGTE NWLGDMEMSP EWNYPVKPCS RVMNEDHGQI 540 TRSSQSLPIC DTSVLHEQGI IQETSGLLCD EAATMEPMMD KSYLKRDINQ RDVGGVRLPG 600 ADKVAIGETA IPHIDLNFSA NVLPTQGLEQ NGQSSSALPF LNLNSIGQSQ GAINSESSRG 660 GNINNPQNHA VFQVEKSINK PGTGDGSALQ FSSAIQPTQN MVSSEQLTQL TNLSASLVQI 720 LGNGQQLPQL YAALNSHNVM QVPSSVKSEG PIAPDSAVAS QTSEAIRSQN QNQSQYDPLS 780 DSIDPKQLEL VSPPGFSVNP SGQKSNADGK PNGGLENHKV SEINGEVEAE EGRKAQAENK 840 VPQENGEVQK TDGDDKDDKA DEGKKSKDTK GLRAFKFALA EFVKELLKPT WKEGQINKDA 900 YKNIVKKVVD KVIGTMQGAA NIPQTQEKID QYLSFSKSKL TKLVQAYVEK SRKG

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence

FSFVFAPCLV SLLLDTICKN LHQLQSQILL TASVYLSKTQ YFNKVNAWRD CQIVLVLVVN  60
LSLCFYDMSG TRRKHNSKWD LKEESQLSHE KVRDSARPGK AGISFYERES RSGRFSPRAA  120
GYNSGHNWSA READDIQSSR HDMQFSSREP LPGSRSSRKD DRIDDYRENF KATATWDADG  180
NYDMKMSPGL DDWRQQIRRR SPRKDWNGHR RSRSRSRSRS RSRSWNRSRS PVRELRRESG  240
VYGRNRGRPG VSAQLCKDFA AGKCRRGSHC HFSHHSSQSY EDNWDSRHKQ AGAPRFSTPH  300
ESREYPIRSG RNREGSLEIV DIPCKFFAAG NCRNGKYCKF FHSSQALASP VRRSRDDSLV  360
RGQNSDEREK LWHGSKWTDA TTISDAARLS EDKNERMGAK KSRDDGLVRN HNSDDVEKLW  420
NGSTWNGTDI STDAAKLSEN QNVGMGAPGP RFSGWSTDDR LPHTLDENAT HSKITAVTLG  480
GDEINKMEAS QGSIKIAGAV MGAPESGGTE NWLGDMEMSP EWNYPVKPCS RVMNEDHGQI  540
TRSSQSLPIC DTSVLHEQGI IQETSGLLCD EAATMEPMMD KSYLKRDINQ RDVGGVRLPG  600
ADKVAIGETA IPHIDLNFSA NVLPTQGLEQ NGQSSSALPF LNLNSIGQSQ GAINSESSRG  660
GNINNPQNHA VFQVEKSINK PGTGDGSALQ FSSAIQPTQN MVSSEQLTQL TNLSASLVQI  720
LGNGQQLPQL YAALNSHNVM QVPSSVKSEG PIAPDSAVAS QTSEAIRSQN QNQSQYDPLS  780
DSIDPKQLEL VSPPGFSVNP SGQKSNADGK PNGGLENHKV SEINGEVEAE EGRKAQAENK  840
VPQENGEVQK TDGDDKDDKA DEGKKSKDTK GLRAFKFALA EFVKELLKPT WKEGQINKDA  900
YKNIVKKVVD KVIGTMQGAA NIPQTQEKID QYLSFSKSKL TKLVQAYVEK SRKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	219	RSRSRSRSR
2	211	221	RSRSRSRSRSR
3	213	221	RSRSRSRSR
4	213	223	RSRSRSRSRSR
5	215	223	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-13	C3H family protein