PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58470.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 942aa MW: 104317 Da PI: 8.8069

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	243	263	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++fa+ G C++G+ C+F+H GAY58470.1 243 LCKDFAA-GKCRRGSHCHFSHH 263 9****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence
FSFVFAPCLV SLLLDTICKN LHQLQSQILL TASVYLSKTQ IVLVLVVNLS LCFYDMSGTR 60 RKHNSKWDLK EESQLSHEKV RDSARPGKAG ISFYERESRS GRFSPRAAGY NSGHNWSARE 120 ADDIQSSRHD MQFSSREPLP GSRSSRKDDR IDDYRENFKA TATWDADGNY DMKMSPGLDD 180 WRQQIRRRSP RKDWNGHRRS RSRSRSRSRS RSWNRSRSPV RELRRESGVY GRNRGRPGVS 240 AQLCKDFAAG KCRRGSHCHF SHHSSQSYED NWDSRHKQAG APRFSTPHES REYPIRSGRN 300 REGSLEIVDI PCKFFAAGNC RNGKYCKFFH SSQALASPVR RSRDDSLVRG QNSDEREKLW 360 HGSKWTDATT ISDAARLSED KNERMGAKKS RDDGLVRNHN SDDVEKLWNG STWNGTDIST 420 DAAKLSENQN VGMGAPGPRF SGWSTDDRLP HTLDENATHS KITAVTLGGD EINKMEASQG 480 SIKIAGAVMG APESGGTENW LGDMEMSPEW NYPVKPCSRV MNEDHGQITR SSQSLPICDT 540 SVLHEQGIIQ ETSGLLCDEA ATMEPMMDKS YLKRDINQRD VGGVRLPGAD KVAIGETAIP 600 HIDLNFSANV LPTQGLEQNG QSSSALPFLN LNSIGQSQGA INSESSRGGN INNPQNHAVF 660 QVEKSINKPG TGDGSALQFS SAIQPTQNMV SSEQLTQLTN LSASLVQILG NGQQLPQLYA 720 ALNSHNVMQV PSSVKSEGPI APDSAVASQT SEAIRSQNQN QSQYDPLSDS IDPKQLELVS 780 PPGFSVNPSG QKSNADGKPN GGLENHKVSE INGEVEAEEG RKAQAENKVP QENGEVQKTD 840 GDDKDDKADE GKKSKDTKGL RAFKFALAEF VKELLKPTWK EGQINKDAYK NIVKKVVDKV 900 IGTMQGAANI PQTQEKIDQY LSFSKSKLTK LVQAYVEKSR KG

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence

FSFVFAPCLV SLLLDTICKN LHQLQSQILL TASVYLSKTQ IVLVLVVNLS LCFYDMSGTR  60
RKHNSKWDLK EESQLSHEKV RDSARPGKAG ISFYERESRS GRFSPRAAGY NSGHNWSARE  120
ADDIQSSRHD MQFSSREPLP GSRSSRKDDR IDDYRENFKA TATWDADGNY DMKMSPGLDD  180
WRQQIRRRSP RKDWNGHRRS RSRSRSRSRS RSWNRSRSPV RELRRESGVY GRNRGRPGVS  240
AQLCKDFAAG KCRRGSHCHF SHHSSQSYED NWDSRHKQAG APRFSTPHES REYPIRSGRN  300
REGSLEIVDI PCKFFAAGNC RNGKYCKFFH SSQALASPVR RSRDDSLVRG QNSDEREKLW  360
HGSKWTDATT ISDAARLSED KNERMGAKKS RDDGLVRNHN SDDVEKLWNG STWNGTDIST  420
DAAKLSENQN VGMGAPGPRF SGWSTDDRLP HTLDENATHS KITAVTLGGD EINKMEASQG  480
SIKIAGAVMG APESGGTENW LGDMEMSPEW NYPVKPCSRV MNEDHGQITR SSQSLPICDT  540
SVLHEQGIIQ ETSGLLCDEA ATMEPMMDKS YLKRDINQRD VGGVRLPGAD KVAIGETAIP  600
HIDLNFSANV LPTQGLEQNG QSSSALPFLN LNSIGQSQGA INSESSRGGN INNPQNHAVF  660
QVEKSINKPG TGDGSALQFS SAIQPTQNMV SSEQLTQLTN LSASLVQILG NGQQLPQLYA  720
ALNSHNVMQV PSSVKSEGPI APDSAVASQT SEAIRSQNQN QSQYDPLSDS IDPKQLELVS  780
PPGFSVNPSG QKSNADGKPN GGLENHKVSE INGEVEAEEG RKAQAENKVP QENGEVQKTD  840
GDDKDDKADE GKKSKDTKGL RAFKFALAEF VKELLKPTWK EGQINKDAYK NIVKKVVDKV  900
IGTMQGAANI PQTQEKIDQY LSFSKSKLTK LVQAYVEKSR KG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	207	RSRSRSRSR
2	199	209	RSRSRSRSRSR
3	201	209	RSRSRSRSR
4	201	211	RSRSRSRSRSR
5	203	211	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-13	C3H family protein