PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58546.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 164aa MW: 18876.4 Da PI: 6.8536

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.6	2.4e-39	9	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk lrrkC+kdCvlapyfp+++p++f vhk++Gasn++k+l+++p++ re+a++s++ eA+ r++dPvyG+vg+i++lqq++ ++++el + k GAY58546.1 9 RCAACKSLRRKCPKDCVLAPYFPSTDPQRFSEVHKIYGASNISKMLQNIPQHLREMAADSMAIEAKLRVQDPVYGCVGIIHQLQQRIIEVQSELLKSK 106 6******************************************************************************************9997765 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MSWNSSSSRC AACKSLRRKC PKDCVLAPYF PSTDPQRFSE VHKIYGASNI SKMLQNIPQH 60 LREMAADSMA IEAKLRVQDP VYGCVGIIHQ LQQRIIEVQS ELLKSKCEIA FCNAHELQQQ 120 QQWQQLQHWQ QQQPMFHAAH ELSWLDSSDQ QELTSDPSFS EFGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-46	LBD family protein