PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58839.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 155aa MW: 17420.7 Da PI: 8.6951

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.2e-11	57	79	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C++Gd+Ck+ H++ GAY58839.1 57 VCSRFVKTGFCPFGDSCKYLHPK 79 5********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
MPLGKYYCDY CDKQFQDTYF ARKRHLQGIQ HLRAKALWYD SLNETNQTYL DGFPKGVCSR 60 FVKTGFCPFG DSCKYLHPKN NPAQNTGNQG LRATGFTDIN ARSSSVDQRI YLAGGSSFPG 120 DMMRDSMGMS WGNLPPSLKP PPEGGYPLLP FVDWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	4e-50	C3H family protein