PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY58848.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24873.5 Da    PI: 10.0823
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY58848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-273787151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKA+ELS+LCdaeva+i+fs+tg+l++yss
  GAY58848.1 37 KKIDNPTARQVTFSKRRRGLFKKAQELSTLCDAEVALIVFSTTGRLFDYSS 87
                68***********************************************96 PP
2K-box52.81.7e-181131981398
       K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + +  +  +a L ke+    re+R+++Ge+L++L+++eL++Le+ Le +l+++ ++K e ll++i+ l++ke +l een +L++ +
  GAY58848.1 113 QLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHY 198
                 56667778899999999999**************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MERYSTAPKT TPLKEKNQAQ VLVDFLGKMT RQKIEIKKID NPTARQVTFS KRRRGLFKKA  60
QELSTLCDAE VALIVFSTTG RLFDYSSSSM KQVIDRHNLH SQNLHKFDQP SLQLQLESST  120
YAILSKEMAD RTRELRQMKG EELQELNMEE LMRLEKSLEG GLSRVVQTKG ERLLNEIDAL  180
RRKEAQLTEE NLRLKQHYSK NNNYYILSAT SHLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-67MIKC_MADS family protein