PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY58889.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 184aa    MW: 21098.6 Da    PI: 4.9107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY58889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-10103124526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++++rtG C++G +CkF+H+
  GAY58889.1 103 DCSYYLRTGRCRFGMSCKFNHP 124
                 6********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MLKLISESYI PSKWIFLIHP FDSNVNEENR YYTQLSLPPN SDLDPPPLDM QNLDIEDPED  60
QVDSDTEEEV ENVDKNNKQV DEVTGNQMTR RKFCYPQRPG VHDCSYYLRT GRCRFGMSCK  120
FNHPVPRQIQ SLNQSINSNT VSIEMNPNNS ANSNRMSTGK GKKGKSCMEM EEDTLVLLSI  180
AKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-13C3H family protein