PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59043.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 430aa MW: 47713.9 Da PI: 6.5979

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl GAY59043.1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	42.1	2.1e-13	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w+ GAY59043.1 67 RGAFSVQEESLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109 89******************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SVQEESLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHKPLS EVENDKEQQL TVINKNSDKA SAESSKDLAA EIMHPLEVSS SSEINTNNNN 180 NASMLNLVDK FAAAASNNES STTSCRPDLM GYFPFQKLNY GPNIGLSVNT NTSSLFFNPN 240 STSSEMISEF NSSIIPSISA SVFQTPIRVK PSISLPSENP SVGTSDINGI QNWEPSSFSN 300 NCSTSNGSTT SIELQSSSSF FEGNVFSWGI TADCGKSNDQ EAQIRALEGD QEDIKWSEYL 360 NTPFFLGSTI QNHQTSQSMY SDVKPEAHFI SEGSNTTTWI QNQHQQASQT TPAMYTKDLQ 420 RLSVAFGQTL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SVQEESLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVENDKEQQL TVINKNSDKA SAESSKDLAA EIMHPLEVSS SSEINTNNNN  180
NASMLNLVDK FAAAASNNES STTSCRPDLM GYFPFQKLNY GPNIGLSVNT NTSSLFFNPN  240
STSSEMISEF NSSIIPSISA SVFQTPIRVK PSISLPSENP SVGTSDINGI QNWEPSSFSN  300
NCSTSNGSTT SIELQSSSSF FEGNVFSWGI TADCGKSNDQ EAQIRALEGD QEDIKWSEYL  360
NTPFFLGSTI QNHQTSQSMY SDVKPEAHFI SEGSNTTTWI QNQHQQASQT TPAMYTKDLQ  420
RLSVAFGQTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-123	MYB family protein