PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY59080.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 227aa    MW: 25169 Da    PI: 4.796
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY59080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.9e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrr+C++dC++apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar++dP+yG+v++i++lqqq+++l++e+++l+
  GAY59080.1   7 SCGACKFLRRRCTNDCIFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRSDAAITISYEALARMHDPIYGCVAHIFALQQQVANLQEEIEMLE 105
                 6************************978*******************************************************************9988 PP

      DUF260  99 ee 100
                 ++
  GAY59080.1 106 NH 107
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MTGLGSSCGA CKFLRRRCTN DCIFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN  60
RSDAAITISY EALARMHDPI YGCVAHIFAL QQQVANLQEE IEMLENHMAN NLVGAVFSGG  120
SQTPNEPCSQ SYFSPQLEAM NTLYYPNQQA ELLQNHAANI NINQAFESQT NAEIHCLQGW  180
EDQNFLTESN PNHLLGNLDA VEQENFANYP SFDINGNAIN LQGPSWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-46LBD family protein