PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY59319.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 261aa    MW: 29166.1 Da    PI: 8.8373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY59319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-1619511143
                HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsst 43
                 tf kR+n ++KKA+E  +LCd+ev++ii++++
  GAY59319.1 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPK 51
                59*****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MACQALKLEP TKQEKACLAT FKKRKNSLMK KAYEFTTLCD VEVCIIIYGP KVKGHSLKPE  60
TWTSKEGELT SIIRKYEKKI SAVDHGQHRT LSLSKFDESK MRQVDDAATR ACKKICVGDF  120
TTWDQGMDSL SEDQLKMILS TMDDKLKDVD RKLNTIKRDQ NVVNKATSRK LEHDHSNDAK  180
SLVNLQPAYQ VSQKLPSDSS FMEIQCGGGS GSTIPFTPLQ GQINWNSSLT MSPTSSGIYD  240
GSAAQAKKSN DIRKDQSSQE E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-17M-type_MADS family protein