PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59638.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 367aa MW: 41857.4 Da PI: 5.4202

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	18	60	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+++e +l+C++ ++C++C + H + H++ GAY59638.1 18 MRTCNTCEAAVSRLYCHTHLAYFCDSCDERVHAYnsmalpHER 60 589*****9*******************77778888876 PP
2	CCT	65.2	1.9e-22	301	344	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++lRY+eKrk R+FeKkirY+sRKa+Ae RpRvKGrF++++ GAY59638.1 301 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKT 344 89***************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MLNANSSGDG DGYPGDWMRT CNTCEAAVSR LYCHTHLAYF CDSCDERVHA YNSMALPHER 60 VWVSAACENG QAAFSCNTDA ASLRLSCDAD KHLANFLAHH HHARVPAPPF SDLFTAPSST 120 YLPDPMFDTE KEVTAPTIDE VDEDEMDSWL LLEPDNHDNQ MNSGHTYVQE LDESFGMEYN 180 SCTKHECQDQ NNLQQLQCTH RGDNGSDGVV PVQPFQVKDK EEQQKQQQQQ ENEYFSRKYE 240 ASKAAFINNP SISQTVPVSG ILPKATRADI SSSYTKYSQG TNDLFPNFSF FVPLQFSPMN 300 RVAKVLRYRE KRKARRFEKK IRYASRKAYA EARPRVKGRF ARKTEMDFEV DEMFSIEEYG 360 YGIVPSY

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MLNANSSGDG DGYPGDWMRT CNTCEAAVSR LYCHTHLAYF CDSCDERVHA YNSMALPHER  60
VWVSAACENG QAAFSCNTDA ASLRLSCDAD KHLANFLAHH HHARVPAPPF SDLFTAPSST  120
YLPDPMFDTE KEVTAPTIDE VDEDEMDSWL LLEPDNHDNQ MNSGHTYVQE LDESFGMEYN  180
SCTKHECQDQ NNLQQLQCTH RGDNGSDGVV PVQPFQVKDK EEQQKQQQQQ ENEYFSRKYE  240
ASKAAFINNP SISQTVPVSG ILPKATRADI SSSYTKYSQG TNDLFPNFSF FVPLQFSPMN  300
RVAKVLRYRE KRKARRFEKK IRYASRKAYA EARPRVKGRF ARKTEMDFEV DEMFSIEEYG  360
YGIVPSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	2e-45	CO-like family protein