PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59747.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 609aa MW: 70311.9 Da PI: 6.8694

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.5e-08	403	443	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE el + ++++G++ Wk a +g + + ++k+ w+ GAY59747.1 403 KWTPEELELVRKFHEKHGSN-WKMLADALG--KHRFHVKDAWRR 443 8***************99.******9..667778887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MRAQALDKKW ESKRALCFVF EERPCVMGKK TLGKKGHERE NGIVTEGEVD FKEKEKKRDV 60 DLRASENEVE MKDDVDENEK KINEVGGNDF EFGDSRNGVI VEGHVDTNNT GSEKERQKKK 120 KKKKKRKLEI SEDENEIPKD MRINNDEEVN EINEDSKQKQ LAMDENASLQ KNDQEDSGNN 180 SELKVRKKRK KLLKEGMNND GIGSSLSDNA EGNNKETREA IREREQLDGN MMEKAEKLCN 240 ANSRVEEIEG HAVLEEDGIK EKKKATSVKK HSGGDKKASQ TKKGVETNDL SEGSAQKERS 300 KKVSFSNDVQ VFPSSDVKNG KDDGFVRGKR FSKEEDEMIK RAVMNYIETH GLGEEGLNMV 360 LHCRSHPEVK HCWKEIGSAL PWRPYDSIYY RAHIIFQRDE NRKWTPEELE LVRKFHEKHG 420 SNWKMLADAL GKHRFHVKDA WRRVRLPNQK KGQWSQEEYQ KLFDLVNMDL RMRALEEKKT 480 KHGMLRDNIS WEAISDKLAT RSNAICCMKW YDQLTSPMVA EGKWADTDDF HLVNALSSLD 540 ACCMDDVDWD NLLEHRSGTL CQKRWNQMVK HLGTDGNKSF PEQVEILSTR YSPDVLEARE 600 AYNSKPAVD

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MRAQALDKKW ESKRALCFVF EERPCVMGKK TLGKKGHERE NGIVTEGEVD FKEKEKKRDV  60
DLRASENEVE MKDDVDENEK KINEVGGNDF EFGDSRNGVI VEGHVDTNNT GSEKERQKKK  120
KKKKKRKLEI SEDENEIPKD MRINNDEEVN EINEDSKQKQ LAMDENASLQ KNDQEDSGNN  180
SELKVRKKRK KLLKEGMNND GIGSSLSDNA EGNNKETREA IREREQLDGN MMEKAEKLCN  240
ANSRVEEIEG HAVLEEDGIK EKKKATSVKK HSGGDKKASQ TKKGVETNDL SEGSAQKERS  300
KKVSFSNDVQ VFPSSDVKNG KDDGFVRGKR FSKEEDEMIK RAVMNYIETH GLGEEGLNMV  360
LHCRSHPEVK HCWKEIGSAL PWRPYDSIYY RAHIIFQRDE NRKWTPEELE LVRKFHEKHG  420
SNWKMLADAL GKHRFHVKDA WRRVRLPNQK KGQWSQEEYQ KLFDLVNMDL RMRALEEKKT  480
KHGMLRDNIS WEAISDKLAT RSNAICCMKW YDQLTSPMVA EGKWADTDDF HLVNALSSLD  540
ACCMDDVDWD NLLEHRSGTL CQKRWNQMVK HLGTDGNKSF PEQVEILSTR YSPDVLEARE  600
AYNSKPAVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	ERQKKKK
2	118	124	KKKKKKK
3	118	126	KKKKKKKKR
4	119	125	KKKKKKK
5	119	127	KKKKKKKKR
6	120	126	KKKKKKK
7	120	128	KKKKKKRKL
8	121	127	KKKKKKK
9	121	129	KKKKKKRKL
10	122	127	KKKKRK
11	123	128	KKKRKL
12	187	191	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-137	MYB_related family protein