PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60508.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Whirly

Protein Properties

Length: 178aa MW: 19376.3 Da PI: 10.1611

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	149.7	1.1e-46	65	173	2	112
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 vyk+kaa++v++v+ptf +ldsg lk+kr+G +ll++a+a++erkydW kkq+fals+tev++l+ +++++s+effhdpa+ +sn+G++rk+l+++ + GAY60508.1 65 VYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANA 163 8***********************************************************************************************999 PP Whirly 101 dGsGlfvnlsvt 112 dG +f++ls GAY60508.1 164 DG--FFISLSEY 173 95..89999865 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MMKLSRSLLS SRSQLSEKLL AGEANYVRDG LKSHVLISQA GMSTTGHDVS AKGSLGGRIF 60 APYYVYKGKA AFSVDPVLPT FMKLDSGDLK VKRKGVILLT FAPAIGERKY DWAKKQHFAL 120 SPTEVGSLLT MGPRDSSEFF HDPAMLSSNA GQMRKSLSIK ANADGFFISL SEYSTCVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	3e-59	Whirly family protein