PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60578.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 325aa MW: 35641.5 Da PI: 7.0564

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + +++ g++R++k+c++rw++yl GAY60578.1 14 RGPWSPEEDATLKRYVETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	41.3	3.5e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++Ed + + q G++ W+ Ia++++ gRt++++k++w++ GAY60578.1 69 GNFTEDEDHVICTLYSQIGSR-WSIIASRLP-GRTDNDVKNYWNT 111 89*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDATLKRYVE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGN FTEDEDHVIC TLYSQIGSRW SIIASRLPGR TDNDVKNYWN TKLKKKLLAG 120 KVSLLTSNNA NNSPIISGSN PTDTNHLHDS NPSISLPKSE ACDPQYPASP TQLSSSPSMP 180 LLTDHHDHIA YGLSTVNNHH FIPPHSAGMS FTSSTVSHQL GTSLKNSPVL TSSQEGSSVT 240 LPAGNNVNGG VEDADQILMD FGFGIGDPCD QYYVNNNGTL WYNHQEKATS HHDDLSNWYP 300 SLLAADSSYA DIKPQGLNQS VINQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-73	MYB family protein