PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY60852.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21454.4 Da    PI: 10.123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY60852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.6e-181561147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k+ien+  r + fskRr gi KKA+EL +L++ae+ +++fs++gk +
  GAY60852.1 15 KKIENENDRMIAFSKRRSGIYKKASELATLTGAEIGIVVFSPSGKPF 61
                68******************************************955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MAAKKTRGRQ KIEMKKIENE NDRMIAFSKR RSGIYKKASE LATLTGAEIG IVVFSPSGKP  60
FSFGHPSLEA VANRFLGLNQ EHPNDNTHLL VEAHRRVRIS ELNQQHNELL RQLDEENARE  120
KILKQNRKGK ETQPHWWETP VNEINHQELL QMDAAVDDLH KTFLAKLNEK TAAASSSMAP  180
PMYFHHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-41M-type_MADS family protein