PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61134.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 731aa MW: 79267.7 Da PI: 6.5082

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg GAY61134.1 305 PCPDFRK-GACRRGDMCEYAHG 325 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MCCGPERLNR TPSPRSPHIS FDESRHTNVD MNHLTVETDD AFASLLELAA NNDVEGFKRS 60 IVCDPSGVDE VGLWYGRQKG SKQMVNEQRT PLMVAATYGS IDIIRLILSE SGADVNLSCG 120 NDKSTALHCA ASGGALNAVD VVKLLLAAGA DPNLVDAKGH RPVDVIVVPP KFQDVRLTLE 180 ELLATDGSVE RNLRVSTTTS NSNSPPLSPA LENGSPTSAS GSPMKSMSVD APSFSVSEKK 240 EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTPEE 360 LRPLYVSTGS AVPSPRSSTS GATAMDFAAA LSLLPGSPSS VNVMSPSPFT PPMSPSANGI 420 SHSNVAWPQP NVPALHLPGS NLQSSRLRSS LNARDMPVDD FNMLPDFDVQ QQQLLNELST 480 LSQPTLSSSL NRSGRMKTLT PSNLDDLFSA ESSSPRYSDQ ALAAAVFSPT HKSAVLNQFQ 540 QQQQSMLSPI NTNFSPKNVD HPLLQASFGV PSSSGRMSPR NVEPISPMGS RVSLLAQREK 600 QQQFRSLSSR ELGSNSAAVV GSPVNSWSKW GSSNGKPDWA VTTDELGKLK RSSSFELGNG 660 EEPDLSWVQS LVKESPTEVK EKLATPVSGI AAASSSSEGS NRNPQIESVD HAVLGAWLEQ 720 MQLDQLVAQQ N

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MCCGPERLNR TPSPRSPHIS FDESRHTNVD MNHLTVETDD AFASLLELAA NNDVEGFKRS  60
IVCDPSGVDE VGLWYGRQKG SKQMVNEQRT PLMVAATYGS IDIIRLILSE SGADVNLSCG  120
NDKSTALHCA ASGGALNAVD VVKLLLAAGA DPNLVDAKGH RPVDVIVVPP KFQDVRLTLE  180
ELLATDGSVE RNLRVSTTTS NSNSPPLSPA LENGSPTSAS GSPMKSMSVD APSFSVSEKK  240
EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTPEE  360
LRPLYVSTGS AVPSPRSSTS GATAMDFAAA LSLLPGSPSS VNVMSPSPFT PPMSPSANGI  420
SHSNVAWPQP NVPALHLPGS NLQSSRLRSS LNARDMPVDD FNMLPDFDVQ QQQLLNELST  480
LSQPTLSSSL NRSGRMKTLT PSNLDDLFSA ESSSPRYSDQ ALAAAVFSPT HKSAVLNQFQ  540
QQQQSMLSPI NTNFSPKNVD HPLLQASFGV PSSSGRMSPR NVEPISPMGS RVSLLAQREK  600
QQQFRSLSSR ELGSNSAAVV GSPVNSWSKW GSSNGKPDWA VTTDELGKLK RSSSFELGNG  660
EEPDLSWVQS LVKESPTEVK EKLATPVSGI AAASSSSEGS NRNPQIESVD HAVLGAWLEQ  720
MQLDQLVAQQ N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein