PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61264.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 166aa MW: 19304.4 Da PI: 10.1061

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.5	1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskR+ngilKKA+ELSvLCdae+a++ifs++gk y y+s GAY61264.1 9 KRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYAS 59 79***********************************************86 PP
2	K-box	62	2.4e-21	82	149	8	75
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 ++ ++ + ++ e++kL++ +e+++ +Rhl GedL+sLs+k+L++Le+qL+ ++++iRskK +++ e GAY61264.1 82 DQRSRLVQLWKSEIEKLERSVETMEARLRHLTGEDLSSLSIKDLKKLERQLKIGVERIRSKKIKMYDE 149 466667899*****************************************************998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MGRGKVELKR IENKTNRQVT FSKRKNGILK KAFELSVLCD AEIALVIFSP SGKAYHYASD 60 HHTMDKIIAR YRREVGQLNS ADQRSRLVQL WKSEIEKLER SVETMEARLR HLTGEDLSSL 120 SIKDLKKLER QLKIGVERIR SKKIKMYDEM APTEAEEQCL WCIPTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	7e-40	MIKC_MADS family protein