PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61552.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 367aa MW: 40976.1 Da PI: 7.276

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	88.9	1.1e-27	52	202	3	117
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec.eaes 77 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl k i++l+ + + +s+++ ++++ GAY61552.1 52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTKNDIDKLPPLqipqglfghqfhpsqmmlqsnapT-TSHHSLmTNST 149 79*************************************************************888888888666666666554422.22212221111 PP TCP 78 ssssasnsssg....................kaaksaa.kskksqksaasalnlakesrak 117 s+ + +a+k ++ ++ +++k +++a++l++++++k GAY61552.1 150 SV--------DdhgdqdqsryswdleavslmRANKGKEvERDHEDKIHQEASSLSAHHHQK 202 11........012222223466777777777444433334444444444445555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MISTSRERGF QAKQEDDTSE SSKLISRPPP SSSRQWSGFR NPRIVRVSRS FGGKDRHSKV 60 CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LDVTKNDIDK LPPLQIPQGL 120 FGHQFHPSQM MLQSNAPTTS HHSLMTNSTS VDDHGDQDQS RYSWDLEAVS LMRANKGKEV 180 ERDHEDKIHQ EASSLSAHHH QKFYPGLFNN TSNNNAMPLN PYYHWEPSNL SLSQFGSGHD 240 FLSHQQAADQ NYAFYSNAAA AAASLSHHHH LFFCPPAASA TMPSLFPTYN NAPDVSNAQE 300 GTSHDQSPRQ MNHFQLLSSS SSSSSQSALH NNLLLPISSL AITSNSSQVK PFSLLNAESN 360 PHEKEDS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MISTSRERGF QAKQEDDTSE SSKLISRPPP SSSRQWSGFR NPRIVRVSRS FGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LDVTKNDIDK LPPLQIPQGL  120
FGHQFHPSQM MLQSNAPTTS HHSLMTNSTS VDDHGDQDQS RYSWDLEAVS LMRANKGKEV  180
ERDHEDKIHQ EASSLSAHHH QKFYPGLFNN TSNNNAMPLN PYYHWEPSNL SLSQFGSGHD  240
FLSHQQAADQ NYAFYSNAAA AAASLSHHHH LFFCPPAASA TMPSLFPTYN NAPDVSNAQE  300
GTSHDQSPRQ MNHFQLLSSS SSSSSQSALH NNLLLPISSL AITSNSSQVK PFSLLNAESN  360
PHEKEDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-48	TCP family protein