PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY61856.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21370.3 Da    PI: 9.2044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY61856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.46.7e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  GAY61856.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                79***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNS  60
NSIRSTIDRY KKACSDNSNS GTVTEINAQQ ALKYKVPNKN LISPITCDPP ETVLSAGVSK  120
AAAANSNEIE LENESVCLRS KIAEMERFQQ ANMVTGQELN AIHALASRNF FSPAIIEGGG  180
TAYSHPDKKI LHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.21e-76MIKC_MADS family protein