PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61907.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 393aa MW: 44558.4 Da PI: 7.2651

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.4	2.3e-15	70	129	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g GAY61907.1 70 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDEEEAAARAYDLAALKYWG 129 789****************888855555447***********************98 PP
2	AP2	52.4	1.3e-16	172	223	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g GAY61907.1 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 223 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEMMMVKQEE TQGRRRALVV VDGEVQSARC VKRRRRDPAV TSLGCDDNQS QQQQNDHISG 60 AAATTVKRSS RFRGVSRHRW TGRYEAHLWD KLSWNVTQKK KGKQVYLGAY DEEEAAARAY 120 DLAALKYWGT STFTNFPISD YEKEIEFMQT VTKEEYLASL RRKSSGFSRG VSKYRGVARH 180 HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK 240 PGTNNILTAG HELPTLTEPQ SVLPSPTDFS PREEPKYLLF QSNPITADFL NSPQKQEDCF 300 QSNVSVNSGN NNNKPSTPSA LGLLLRSSIF KELVEKNSNV SEDDSEGDEK KNQHGTACDD 360 EFGGIFYDGI GDFPFICSSN TGSIDFQERE HFI

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEMMMVKQEE TQGRRRALVV VDGEVQSARC VKRRRRDPAV TSLGCDDNQS QQQQNDHISG  60
AAATTVKRSS RFRGVSRHRW TGRYEAHLWD KLSWNVTQKK KGKQVYLGAY DEEEAAARAY  120
DLAALKYWGT STFTNFPISD YEKEIEFMQT VTKEEYLASL RRKSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK  240
PGTNNILTAG HELPTLTEPQ SVLPSPTDFS PREEPKYLLF QSNPITADFL NSPQKQEDCF  300
QSNVSVNSGN NNNKPSTPSA LGLLLRSSIF KELVEKNSNV SEDDSEGDEK KNQHGTACDD  360
EFGGIFYDGI GDFPFICSSN TGSIDFQERE HFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	36	RRRALVVVDGEVQSARCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-81	AP2 family protein