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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GAY61949.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 460aa MW: 51707.4 Da PI: 5.1707 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 314.9 | 1.8e-96 | 76 | 459 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
+lL ecA+a+s++d +++++lL+ l+elasp+gd q+la+yf++AL + ++s++++yk+l++ ++++++ +++ + f+evsP+ +f+h++ N a
GAY61949.1 76 KLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGA 174
7999**********************************************************9999985554444444445****************** PP
GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpg 199
Ilea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ +s + ++e+g+r++kfA+ +gvpfef+v+ +rl +l+ +L vk++
GAY61949.1 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT-ASLVRLVMKEIGQRMEKFARLMGVPFEFKVItGLNRLVELTKGTLGVKED 272
************************************************.55799*************************94456*************** PP
GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..sFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
Ea+aVn++ +l r+ +e+ r +v+++++sl+Pkvv++ve+ead++s+ +F++ f e+l++y+ f++le+++ ++s+er ++Ere +r+iv
GAY61949.1 273 EAVAVNCIGALRRVA-----VEE-RGAVIQMFQSLKPKVVTIVEEEADLTSSryDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERE-CSRDIVR 364
**************8.....444.89**********************9665459************************************.89***** PP
GRAS 297 vvac.............egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslv.lgWkdrpLvsvSaWr 374
v+ac +++e er+e+ ++W e+l+ea F+pv +s+++++++k+ll+++ ++g + +++ s + l+Wk++p+v++SaW+
GAY61949.1 365 VLACdddnnssnngngdREEEECERRERGSQWAEKLKEAAFSPVGFSDDVVDDVKALLKRYRaGWGLVLPqgDDNTSGIyLTWKEEPVVWASAWK 459
****33333222222221234568999***********************************999988875544444444**************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 460 aa Download sequence |
MDITLFSPKG THSHHFFSLS NQQLQQSNGD QIALDMQTNN NNNIQPQNSC HTSTSRSSDS 60 GEPCADTTGG NKWASKLLKE CARAISDKDS SKIHHLLWML NELASPYGDC DQKLASYFLQ 120 ALFCKATESG QRCYKTLTSV AEKSHSFDSA RKLILKFQEV SPWTTFGHVA SNGAILEALD 180 GETKLHIIDM SNTLCTQWPT LLEALATRND ETPHLKLTVV VTASLVRLVM KEIGQRMEKF 240 ARLMGVPFEF KVITGLNRLV ELTKGTLGVK EDEAVAVNCI GALRRVAVEE RGAVIQMFQS 300 LKPKVVTIVE EEADLTSSRY DFVKCFEECL RFYTLYFEML EESFVPTSNE RLMLERECSR 360 DIVRVLACDD DNNSSNNGNG DREEEECERR ERGSQWAEKL KEAAFSPVGF SDDVVDDVKA 420 LLKRYRAGWG LVLPQGDDNT SGIYLTWKEE PVVWASAWKP |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37650.1 | 1e-138 | GRAS family protein | ||||




