PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY62227.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 338aa MW: 37757.3 Da PI: 9.5885

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY62227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.9	1.7e-15	8	51	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i + rqvt++kR++ ++KKA E+Sv C+++ +i fs+t GAY62227.1 8 KKIADAKARQVTYAKRKKSLIKKAREISVACGIDLVLITFSPTK 51 6799999**********************************985 PP
2	K-box	14.4	1.6e-06	92	138	45	91
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +Ls ++ Le++L+++l+++ +kKnel+++ ++ +k+++ +++ GAY62227.1 92 DLSSSNIILLERNLKQALQQVQNKKNELIKSPSRKYKKRNQLKKDKA 138 789999999****************************9998776655 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MGKKIEIKKI ADAKARQVTY AKRKKSLIKK AREISVACGI DLVLITFSPT KRGRSTKFCS 60 MKRFKIEDLI QRYLNLSPEK KFQFYEPDPK DDLSSSNIIL LERNLKQALQ QVQNKKNELI 120 KSPSRKYKKR NQLKKDKAKQ DDHLTKERQT KNPGSGSLQM QHENLISDPF RVPNTIAAIT 180 IDGNNNNSEH LNFTNAVTGD CSNNGSVADN NNNNGSSIEN NGSSDADPIA QIPPTIDNTY 240 IQNVMSPTFQ FEADFNEVNF TDGTFNTILS NTNQPLNSKR VFSPVDYEPI FTNNNNNDNG 300 STEKNGGSDA ALCTQVNLLP NSNEAEKGNK EIMVTGFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-13	M-type_MADS family protein