PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY62552.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 317aa MW: 35543.3 Da PI: 9.0574

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY62552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	7	27	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+++F + + H+r+H GAY62552.1 7 CKICNRRFANGKAMGGHMRSH 27 *******************99 PP
2	zf-C2H2	10.9	0.0015	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H GAY62552.1 171 YKCKTCKKEFRSYQALGGHKASH 193 9***********99998888877 PP
3	zf-C2H2	12.7	0.00038	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k+F + L H + H GAY62552.1 220 FKCPFCDKVFDSGQALGGHKKIH 242 89*********999999999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MDKHRICKIC NRRFANGKAM GGHMRSHFAK HPISSSNINP SPPKYPSSSS SLSNMQTYRS 60 VNNRPFSGLE DESEAESSRN LTKARSKRPL RTIESVSNSV TENFLSDREV AMCLLKLSKD 120 NWLQKDKQVV VAEAVVDEDE YVRGKSDDGD NDEEEDKEED ESSLVSRTNK YKCKTCKKEF 180 RSYQALGGHK ASHKKIKIHH NGSSDAAAAG DAVVMDQRVF KCPFCDKVFD SGQALGGHKK 240 IHFTYLATPI TKITSSAKSS GAKFIDLNLP APEDDSEMVK KKSKKAMDFL HFSKVWNIEK 300 MPELICIVKC HLILGYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-23	C2H2 family protein