PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY63139.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 313aa    MW: 36086.9 Da    PI: 6.863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY63139.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtfskRrng+ KKA+ELSvLCd++va+i+fs++g++  +s
  GAY63139.1  9 KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
                79*******************************************98776 PP
2K-box26.33.2e-10103179277
       K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                 q++s+   +++++ e+ qqe+ k k++i+n+++ +R +  +  e  +l e+++ eq Le+ lk++R +K++ll e+ 
  GAY63139.1 103 QATSNPTtNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKQHLLEENC 179
                 5555555699************************77777666666679************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGRVKVQIKR IENTTNRQVT FSKRRNGLVK KAYELSVLCD VDVALIMFSP SGRVSLFSGN  60
KSMEEILARY VNLPEHERGR LRNQEFLQRA LGKLRSEANQ TYQATSNPTT NTDSHLEEVQ  120
QEIVKCKSQI QNMEKRLRIF EEDPSEMTTL YEIKHREQIL EETLKQVRIR KQHLLEENCN  180
SSSTPATSQI HLPPAETSDH MNGFVTESPN NILEWLPHRD SQVHNLNILD SNGLLPLRDE  240
PQEATEILVP PLNMFRGHNM NIDGQISRRD GLEDDNNDMQ RPQFGQAYTL KVKIRNKVHP  300
MVNIEGIEAI ITQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.22e-55MIKC_MADS family protein