PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY63643.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 383aa MW: 43140.3 Da PI: 5.6229

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY63643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.7e-08	15	54	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k + l+C+ ++ lC C +++H+ H GAY63643.1 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAnalslrH 54 57*****************************645555555 PP
2	zf-B_box	16.3	2e-05	57	100	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++C+++ ++++ C + + ++C+dC +H + H+++ GAY63643.1 57 SQICDNCRAEPVSVRCCTENLMFCQDCDWDSHYNssvssvHERS 100 579*************************9999556788888766 PP
3	CCT	64.7	2.8e-22	333	377	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a+lRYkeK+k+R + K+irYesRKa+A++R+RvKGrFvk++e GAY63643.1 333 RGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC 60 DNCRAEPVSV RCCTENLMFC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL 120 MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF 180 NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC 240 VADGKLMWDW DPSYPAAQFQ NHSNQPFSSH TPTTEESNNT PIIGPPSDYR PHEFETWEST 300 KVVQGMHHSI PHGSETANEA ITQFDKELLA KNRGNAMLRY KEKKKNRSYG KQIRYESRKA 360 RADTRKRVKG RFVKASEISD VEI

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC  60
DNCRAEPVSV RCCTENLMFC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL  120
MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF  180
NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC  240
VADGKLMWDW DPSYPAAQFQ NHSNQPFSSH TPTTEESNNT PIIGPPSDYR PHEFETWEST  300
KVVQGMHHSI PHGSETANEA ITQFDKELLA KNRGNAMLRY KEKKKNRSYG KQIRYESRKA  360
RADTRKRVKG RFVKASEISD VEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	1e-66	CO-like family protein