PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY63822.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 300aa    MW: 32690.2 Da    PI: 9.2098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY63822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08113138227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ktelCr   + G C++G +C+FaHg+
  GAY63822.1 113 KTELCRSREEVGMCRFGTKCQFAHGK 138
                 9***********************96 PP
2zf-CCCH23.78.1e-08157176525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+ f   G C yG++C+F+H
  GAY63822.1 157 ICKSFTT-GSCIYGSKCRFIH 176
                 6999988.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MQRVVESVYK SKMGKQKSPN GNVSPLMKYL SSSSTSSSSL SSRSALSMGP FSPVPIMSKS  60
NSSSSSCHLS AVDEEDVYVM DGLPIMRYSP SPSPSPSPSP SPSSSSSSSS SSKTELCRSR  120
EEVGMCRFGT KCQFAHGKGE LRSTLFPTTK NKSEAQICKS FTTGSCIYGS KCRFIHQVMT  180
DSALVLTIQM EDHSMKACVC ESPVTPVTFK PRLTNTAIKP EHTRKTTALV NKHVQSRATS  240
TSSRDNWSPQ DDGIEVTLPC HPSKTPPRVK VDEYIDTVLC CPTTAARRRL PVFTKICPEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-10C3H family protein