PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY63840.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 216aa    MW: 23830.9 Da    PI: 7.9144
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY63840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82e-39131141101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k
  GAY63840.1  13 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVK 111
                 7*************************99********************************************************************999 PP

      DUF260  99 eel 101
                 ++l
  GAY63840.1 112 AQL 114
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MASSGSAAGT GSPCGACKFL RRKCASDCIF APYFCSEQGP ARFAAIHKVF GASNVSKLLL  60
HVPVADRCEA VVTIAYEAQA RIRDPVYGCV AHIFALQQQV ACLQAQLMQV KAQLAHNMMD  120
TRSIENHHQW QGNCTITGVP SFPSSYPGNY ANPISPQSSL ESAYCHNNDG MNNMQEIESR  180
SDEFSFQGYP HNYRKRPYNN TDLGELQALA LRMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-64LBD family protein