PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64282.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 170aa    MW: 18846.7 Da    PI: 9.2854
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.3e-161458145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie +  r vtfskRr+g++KKA+E    ++ ++av++fs+ g+
  GAY64282.1 14 KKIEKQKARMVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGN 58
                689***************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MAPTGKGKMK IEIKKIEKQK ARMVTFSKRR QGLFKKAQEY ANITGSQIAV LVFSPAGNPY  60
VHGSPSFDAV IDKFLSVNGG ASSSGQVGAH HNEADVCRTP TPFHLVLQNH HNEADVCRGF  120
LMALEDKIKR CRSAEDLSAV KAELEEVRVK VLQRLKHIEE DEFVTSLLNC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-17M-type_MADS family protein