PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64388.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20783.5 Da    PI: 9.7067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.28e-171156247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                +ie++  r +tfskRr gi KKA+EL +L++ e+a+++fs++gk +
  GAY64388.1 11 KIESEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 56
                6999***************************************855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MADKKTKGRQ KIESEDGRLI TFSKRRSGIY KKASELVTLT GSEIAILVFS QSGKPFSFGH  60
PSIEAVANRF VGLNQAANDN THPLAEAHRQ VRINELNHQH NELLRQLDEE KEREKVLKQM  120
RRGKETQPRW WETSVDELNH QELLQMDATI DNLYKTFLAK LDEKTAAASS SMAPPMYFHH  180
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-36M-type_MADS family protein