PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64389.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 252aa MW: 28879.8 Da PI: 9.7542

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.1	7.1e-11	2	33	18	49
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49 +gi KKA EL +L++ e+av++fs++gk y++ GAY64389.1 2 AGIYKKATELVTLTGSEIAVVVFSQSGKPYTF 33 69*****************************9 PP
2	SRF-TF	46	6.6e-15	88	127	10	49
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +tfskRr gi K A+EL +L++ e+a+++fs++gk y++ GAY64389.1 88 IITFSKRRSGIYKNASELVTLTGSEIAIVVFSQSGKPYTF 127 68*************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MAGIYKKATE LVTLTGSEIA VVVFSQSGKP YTFGHRQVSI NELNQQHNEL RRQLDEEKEQ 60 EKMLTQMRRG KETQPPKKTK GRQKIEMIIT FSKRRSGIYK NASELVTLTG SEIAIVVFSQ 120 SGKPYTFGHP SVEAVANRFL GMNQLPNDNI HSLVVGHRQV RINELNQQHN ELRRQLDEEK 180 EQEKILTQMR RGKETQPRMW ETPVDEHNLQ EQLQMDSAVD DLHQIFLAKL NERAAAAAAS 240 SPVAPSLYFH HK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-29	M-type_MADS family protein