PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64391.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20411.2 Da    PI: 9.7866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.6e-151454949
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  +tfskRr gi K A+EL +L++ e+a+++fs++gk y++
  GAY64391.1 14 MIITFSKRRSGIYKNASELVTLTGSEIAIVVFSQSGKPYTF 54
                568*************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MAAKKTKGRQ KIEMIITFSK RRSGIYKNAS ELVTLTGSEI AIVVFSQSGK PYTFGHPSVE  60
AVANRFLGMN QLPNDNIHSL VVGHRQVRIN ELNQQHNELR RQLDEEKEQE KILTQMRRGK  120
ETQPRMWETP VDEHNLQEQL QMDSAVDDLH QIFLAKLNER AAAAAASSPV APSLYFHHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-30M-type_MADS family protein