PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64395.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18090.6 Da    PI: 9.5539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.4e-112268147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k+ien+  r +tfskR  gi  K +EL +L+   +a ++fs++gk +
  GAY64395.1 22 KKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPF 68
                68******************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
PIIINCGNSG QENQKETKDE MKKIENEDGR LITFSKRTSG IYRKVSELVT LTVSAIARLV  60
FSQSGKPFSF GNPSIEAVAN RFLGLNCQMR KRKETQPRWW ETPVYEFNHQ ELLQMDATID  120
NLSRTFIAKL NEKTAAASSS AAPPMYFHHG LGSFPMQFLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-20M-type_MADS family protein