PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64612.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 25311 Da    PI: 7.963
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.95.4e-231059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ien+   qvt++kRr gi KKA+ELSvLCd++v +++fs++gkl  yss
  GAY64612.1 10 KIENYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS 59
                79**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MGRRKLLMQK IENYPALQVT YTKRRDGIVK KAKELSVLCD TDVGLLMFSP SGKLTKYSSS  60
RRIEDIFLRF ICDEKQEPLE NEDELEKKLI ELCERQFDAE EKMSFYQPKV ENITTIHEAV  120
DHEKFLYSAI RRVEKLNAKL LQKESASRIP ESIELEAASF FDGNEVPVPP NSKKKRRNPS  180
MCEYHHARTN SPTSLNPKIQ YLNKEGHWIL ESGWAME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173177KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-24MIKC_MADS family protein