PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64851.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26759.5 Da PI: 9.1294

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97	8.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ GAY64851.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	72.8	9.8e-25	77	163	3	89
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++ +++e + + +++ e++kLk+++e Lqr+q+h++GedL +LslkeLq++eqq++++lk iRs+K++ll+eq + l kk ke ++ GAY64851.1 77 ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKDKLLKEQNNLLAKKVKEKEK 163 5666667777889*************************************************************9988887776554 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60 SCMERILERY ERYCYAERQL QANEIEPNGN WTLEYSKLKA RMEVLQRNQK HFMGEDLADL 120 SLKELQSVEQ QIDSGLKLIR SRKDKLLKEQ NNLLAKKVKE KEKLLSQEAQ CREQQQQLNH 180 DWNSSNVHLM QTLTNSSYQM GGGSGEEDED TPTGHRANAL LPAWMLRHLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-82	MIKC_MADS family protein