PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64947.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20243.2 Da    PI: 10.3012
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien+  r  tfskRr gi KKA EL +L++ae+ +++fs +gk +++
  GAY64947.1 15 KKIENEDDRMMTFSKRRPGIYKKACELVTLTGAEIGIVLFSLSGKPFTF 63
                68******************************************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MVAKKTRGRQ NIEMKKIENE DDRMMTFSKR RPGIYKKACE LVTLTGAEIG IVLFSLSGKP  60
FTFGHPSLEA VANRFLGSNQ KHPNDNTHPL VEVHRRVRIN ELNQQHNELL RQLDKEKARE  120
KILTQPRKGK ETQPPRRETP VDELNHQELL EMDAAVDDLH KTFLTKLKEK TVAASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-33M-type_MADS family protein