PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64971.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 234aa MW: 25358 Da PI: 9.7385

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.3e-41	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll+++p+++r da++slv+eA+ r+rdPvyG++g i++lqqq+++l+ael+++++ GAY64971.1 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRT 144 7**********************************************************************************************9987 PP DUF260 100 e 100 e GAY64971.1 145 E 145 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MSRDRERFDE IGKRIKRESD VLNSQMGRRQ MLNPNSSAGT LNTVTPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKL LSEVPDSQRA DAANSLVFEA NLRLRDPVYG 120 CLGAISSLQQ QVQSLQAELN AMRTEIMKYK YREAATASTI ISSSNPLFSS GVVSIAGGSS 180 APSLSTSQPP PHPPPPPPPS IVISSSSSSS VSSLYTPPMR TTDFVKALLV LMLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-76	LBD family protein