PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY65223.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 421aa MW: 47128.5 Da PI: 6.8631

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY65223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.9	1.9e-09	68	90	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f++rtG+Ck+G CkF+H+ GAY65223.1 68 EDCPFYLRTGYCKFGFCCKFNHP 90 89********************9 PP
2	zf-CCCH	26	1.6e-08	116	136	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+f++ tG Ck+G+ C+F H+ GAY65223.1 116 CKFYQSTGGCKHGEACRFKHS 136 ********************8 PP
3	zf-CCCH	18.4	3.9e-06	157	178	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f++ t Ck+G+ C+F+H++ GAY65223.1 157 CKFYQGTEGCKHGEACRFSHSM 178 999999**********85 PP
4	zf-CCCH	22.6	1.8e-07	210	231	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++ G CkyG++CkF+H++ GAY65223.1 210 CKYHLSAGGCKYGNTCKFSHSK 231 ********************95 PP
5	zf-CCCH	35	2.3e-11	261	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++r+G C yG C+F+H+ GAY65223.1 261 ECPFYMRNGSCAYGVDCRFNHP 282 7********************9 PP
6	zf-CCCH	38.1	2.5e-12	376	402	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC++f++tG Cky + CkF+H++ GAY65223.1 376 PGEPLCDYFMKTGNCKYRSACKFHHPK 402 589**********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MVDDDGWEDN AAGTWAEESC WSQKREQEEE LSKEFEKNVA LTEESYNPDG NGDSQGTKHE 60 YPSRPFAEDC PFYLRTGYCK FGFCCKFNHP VRGDFQGLKE NERGGFVGQH LGQIQCKFYQ 120 STGGCKHGEA CRFKHSIEKS EESKGEGLME KTVQIQCKFY QGTEGCKHGE ACRFSHSMEK 180 SENPLPFSGV NGMKESKGGS LVEMTGLIGC KYHLSAGGCK YGNTCKFSHS KEKPQTYIKK 240 SEKASPELNF LGLPIRVHEI ECPFYMRNGS CAYGVDCRFN HPDPVADEGS DHFNEASNPA 300 SRSWSPNIIS RKTVPNLDNH SFHPHWMLKS KFNSLQGSVY PQAKAELALS SPALGNLTKT 360 ADTSTYHQFN EFPERPGEPL CDYFMKTGNC KYRSACKFHH PKNGDGKSPQ ISFSVDCCAP 420 V

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MVDDDGWEDN AAGTWAEESC WSQKREQEEE LSKEFEKNVA LTEESYNPDG NGDSQGTKHE  60
YPSRPFAEDC PFYLRTGYCK FGFCCKFNHP VRGDFQGLKE NERGGFVGQH LGQIQCKFYQ  120
STGGCKHGEA CRFKHSIEKS EESKGEGLME KTVQIQCKFY QGTEGCKHGE ACRFSHSMEK  180
SENPLPFSGV NGMKESKGGS LVEMTGLIGC KYHLSAGGCK YGNTCKFSHS KEKPQTYIKK  240
SEKASPELNF LGLPIRVHEI ECPFYMRNGS CAYGVDCRFN HPDPVADEGS DHFNEASNPA  300
SRSWSPNIIS RKTVPNLDNH SFHPHWMLKS KFNSLQGSVY PQAKAELALS SPALGNLTKT  360
ADTSTYHQFN EFPERPGEPL CDYFMKTGNC KYRSACKFHH PKNGDGKSPQ ISFSVDCCAP  420
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-52	C3H family protein